Research Intern (Flow Matching models)

Owkin
Owkin logo
Location
Paris
Job Type
Full-time
Posted
July 7, 2026
Views
6

Job Description

About us

Owkin is an agentic AI company pioneering Biological Artificial Superintelligence to solve problems in biology where human researchers alone have failed.

Owkin builds K Pro - an AI scientist for pharmaceutical research and strategic decision-making. K Pro orchestrates a suite of AI skills and tools to decode complex biology, accelerate research, and dramatically increase productivity.

K Pro is built on Owkin’s unrivalled multimodal patient data network, state-of-the-art AI for biology and a decade of experience working with pharmaceutical partners.

This is a six-month internship position is based in our Paris office.

Please submit your CV in English

About the role

The Computational Drug Discovery team within the Biomedical Department aims at bridging the gap between target discovery and preclinical drug candidates. Blending experts in machine learning, biologics, protein language models and computational chemistry, the team provides solutions in around target tractability, de novo biologics design, cheminformatics, cofolding, etc..

We are looking for a promising research intern to focus on generative approaches, particularly flow matching models. As part of the project, the intern will survey and compare existing approaches, and build workflows that fit our use cases, starting with small molecule generation constrained by binding sites. This internship provides a unique opportunity to study a fast-growing and important field, with clear applications for drug discovery.

In particular, you will:

  • Collaborate closely with, and receive mentorship from the other members of the Biomedical team;
  • Conduct primary research and numerical validation on your topic of study, including re-usable software implementations;
  • Contribute to regular research review;
  • Report your detailed findings to the group.

About you

Required qualifications / experience:

We are looking for someone with

  • MSc year 2+ level in machine learning;
  • Motivation to work at the intersection of (bio)chemistry, drug discovery and AI
  • Excellence in communication and technical writing
  • Experience in Linux/Unix-like environments and Python
  • Experience with deep learning frameworks (Tensorflow, PyTorch, etc.)
  • Fluent in English (spoken and written)
  • Authorization to work legally in France

Preferred qualifications/bonus::

  • Participation in data science projects and competitions
  • Fluency with Git and basic software engineering patterns
  • Previous work or projects in cheminformatics, exposure to diffusion models or flow matching models
  • Contribution to publications in conferences and journals

Ref: #LI-HB1

What we offer

  • Flexible work organization
  • Friendly and informal working environment
  • Opportunity to work with an international team with high technical and scientific backgrounds

Recruitment Process & Security

  • Please complete the form and submit your CV.
  • Owkin is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, sex, gender, sexual orientation, age, color, religion, national origin, protected veteran status or on the basis of disability.

About us

Owkin is an agentic AI company pioneering Biological Artificial Superintelligence to solve problems in biology where human researchers alone have failed.

Owkin builds K Pro - an AI scientist for pharmaceutical research and strategic decision-making. K Pro orchestrates a suite of AI skills and tools to decode complex biology, accelerate research, and dramatically increase productivity.

K Pro is built on Owkin’s unrivalled multimodal patient data network, state-of-the-art AI for biology and a decade of experience working with pharmaceutical partners.

This is a six-month internship position is based in our Paris office.

Please submit your CV in English

About the role

The Computational Drug Discovery team within the Biomedical Department aims at bridging the gap between target discovery and preclinical drug candidates. Blending experts in machine learning, biologics, protein language models and computational chemistry, the team provides solutions in around target tractability, de novo biologics design, cheminformatics, cofolding, etc..

We are looking for a promising research intern to focus on generative approaches, particularly flow matching models. As part of the project, the intern will survey and compare existing approaches, and build workflows that fit our use cases, starting with small molecule generation constrained by binding sites. This internship provides a unique opportunity to study a fast-growing and important field, with clear applications for drug discovery.

In particular, you will:

  • Collaborate closely with, and receive mentorship from the other members of the Biomedical team;
  • Conduct primary research and numerical validation on your topic of study, including re-usable software implementations;
  • Contribute to regular research review;
  • Report your detailed findings to the group.

About you

Required qualifications / experience:

We are looking for someone with

  • MSc year 2+ level in machine learning;
  • Motivation to work at the intersection of (bio)chemistry, drug discovery and AI
  • Excellence in communication and technical writing
  • Experience in Linux/Unix-like environments and Python
  • Experience with deep learning frameworks (Tensorflow, PyTorch, etc.)
  • Fluent in English (spoken and written)
  • Authorization to work legally in France

Preferred qualifications/bonus::

  • Participation in data science projects and competitions
  • Fluency with Git and basic software engineering patterns
  • Previous work or projects in cheminformatics, exposure to diffusion models or flow matching models
  • Contribution to publications in conferences and journals

Ref: #LI-HB1

What we offer

  • Flexible work organization
  • Friendly and informal working environment
  • Opportunity to work with an international team with high technical and scientific backgrounds

Recruitment Process & Security

  • Please complete the form and submit your CV.
  • Owkin is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, sex, gender, sexual orientation, age, color, religion, national origin, protected veteran status or on the basis of disability.
  • Owkin is a great place to work. As a coveted workplace we are, unfortunately, vulnerable to recruitment phishing scams. We urge all job seekers and candidates to be wary of potential scams. Most of these have individuals posing as representatives of prominent companies, including Owkin, with the aim of obtaining personal, sensitive, or financial information from applicants. These scams prey upon an individual’s desire to obtain a job and can sometimes “feel” like a genuine recruitment process. Some red flags are identified below. Should you encounter a recruitment process that claims to be for Owkin but is not consistent with the below, please do not provide any personal or financial information:
  • Legitimate Owkin recruitment processes include communication with candidates through recognized professional networks, such as LinkedIn.
  • Communication is always through an official Owkin email address (from the @owkin.com domain), over the phone or through our applicant tracking system (Greenhouse).
  • The Owkin talent team do use platforms such as LinkedIn and Job Teaser, however if you have any concern or doubt about this contact, please ask for them to send an email from @Owkin.com.
  • The Owkin talent team will not solicit personal data from candidates during the application phase including, but not limited to, date of birth, social security numbers, or bank account information;
  • Legitimate Owkin interviews may be conducted over the phone, in person, or via an approved enterprise videoconferencing service (Google Meets). They will not occur via Signal, Telegram or Messenger
  • Owkin offers of employment are based on merit and only extended once a candidate has interviewed with members of the talent and hiring team. Offers will be extended both verbally and in written format.

If you think that you have been a victim of fraud,

  • Check the identity of the talent team on LinkedIn

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Frequently Asked Questions

Where is the job located, and is it remote/hybrid/on-site?
This six-month internship is based in the Owkin office in Paris, France, and offers a flexible work organization.
What are the key responsibilities for this internship?
You will collaborate with the Biomedical team, conduct primary research and numerical validation on generative approaches (specifically flow matching models), build workflows for small molecule generation, implement re-usable software, contribute to research reviews, and report findings to the group.
What qualifications and experience are required?
You need a second-year MSc level (or higher) in machine learning, motivation for biochemistry/drug discovery/AI, excellent communication and technical writing skills, experience with Linux/Unix and Python, experience with deep learning frameworks (like PyTorch or TensorFlow), English fluency, and authorization to work legally in France.
What is the application process and what should I submit?
You need to complete the application form and submit your CV in English. Legitimate communications will come from an official @owkin.com email, recognized professional networks like LinkedIn, or their applicant tracking system, Greenhouse.

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Job Information

Source: manual
AI Relevance: 85/100 (Highly relevant)
Remote Type: onsite
Allowed Locations: Worldwide
Skills & Tags:
owkin machine learning deep learning cheminformatics drug discovery data science protein clinical

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